PhD Position in Statistical Machine Learning for Self-Driving Microscopy
Location: University of Bern, Switzerland
Your Environment
You will be part of two complementary research communities:
- Pertz Lab -- Institute of Cell Biology (ICB): A leading group pioneering real-time control of cellular signaling dynamics using microscopy, quantitative imaging, and optogenetics. This interdisciplinary team has close ties to engineering and data science.
- Ginsbourger Group -- Institute of Mathematical Statistics and Actuarial Science (IMSV): Internationally recognized in Gaussian process modeling, Bayesian optimal design, and machine learning for scientific discovery. The group fosters strong collaborations across mathematics, ML, and applied sciences.
You will move between both labs regularly, enhancing your ability to communicate across disciplines—a significant advantage for your career.
Project Overview
Cells sense, integrate, and respond to dynamic stimuli through complex signaling networks. The Pertz Lab has developed powerful optogenetic tools and fluorescent biosensors that allow for direct perturbation and measurement of these networks using light. Together with the Ginsbourger Group, we aim to create autonomous "self-driving" microscopes that:
- Build statistical models of biological dynamics in real time
- Predict the most informative next experiment
- Execute it automatically on living cells
Key methods will include:
- Gaussian Processes (heteroscedastic & multivariate)
- Operator-valued and deep kernels
- Active Bayesian experimental design
- Physics-informed neural networks
- Closed-loop control of biological systems
This project provides a rare opportunity to witness mathematical models come alive, effectively guiding experiments in real-time.
Teaching: The position includes a small teaching duty in Statistics, which offers an enhanced salary compared to standard PhD funding in Switzerland.
Why Choose Bern?
- Top-ranked Swiss research university
- International community and high quality of life
- Easy access to Europe
- Outstanding support for early-career researchers
Your Profile
- Master's degree in Mathematics, Statistics, Computer Science, or Engineering
- Solid skills in statistical modeling & probability theory
- Experience in coding (Python, R, Julia, Matlab, etc.)
- Motivation to work closely with experimental researchers
- Curiosity about biological systems; no prior wet-lab experience is needed!
Application Process
Apply online using the form below. Only applications matching the job profile will be considered.