Bioinformatics Software Engineer / Bioinformatics Software Engineeress

Bioinformatics Software Engineer for Microbiome Research

80%-100%, Zurich, Fixed-Term

The position is located at the Institute of Food, Nutrition, and Health at ETH Zurich within the Laboratory of Food Systems Biotechnology (Prof. Dr. Nicholas Bokulich). The Bokulich laboratory develops bioinformatics methods and software for microbiome research, including QIIME 2, and applies these tools to study microbiomes at the interfaces of foods and human health.

Job Description

The successful applicant will develop bioinformatics software for the analysis and integration of microbiome and other omics datasets to study microbial communities involved in foods and human health. The candidate will possess experience in Python programming for bioinformatics software development, collaborative development on GitHub, and will be comfortable coordinating with an interdisciplinary team of scientists and engineers to create and apply open-source software across a diverse range of research topics.

Profile

We are seeking an experienced bioinformatics software engineer to engage in the development of the microbiome bioinformatics platform QIIME 2 and related tools.

Key Qualifications

• Master's degree or bachelor's degree plus equivalent experience in computer science, data science, electrical engineering, computational biology, or other relevant fields.
• Proficient programming skills (Python) and software development/engineering experience.
• Demonstrated experience developing open-source bioinformatics software.
• Experience with collaborative software development using Git and GitHub.
• Experience developing and implementing GitHub Actions workflows.
• Excellent interpersonal communication, teamwork, and organizational skills.
• English language proficiency (spoken and written) for effective communication with colleagues and collaborators.

Desired Qualifications

• Experience developing with QIIME 2.
• Knowledge of biological data structures and formats.
• Experience working with microbiome (marker gene, metagenome) or other omics data.
• Familiarity with the conda and conda-build ecosystem.
• Experience with software containerization (Docker, Singularity).
• Experience working with high-performance computing environments.

Workplace

At ETH Zurich, you will find a dynamic working environment that fosters professional growth and collaboration across various disciplines.

We Offer

• Your career with impact: Become part of ETH Zurich, which supports your professional development and contributes to positive change in society.
• We are committed to a sustainable and climate-neutral university.
• Numerous benefits, including public transport season tickets, car sharing, a wide range of sports offered by the ASVZ, childcare and attractive pension benefits.

We Value Diversity

In line with our values, ETH Zurich encourages an inclusive culture. We promote equality of opportunity, value diversity, and nurture a working and learning environment that respects the rights and dignity of all our staff and students. Visit our Equal Opportunities and Diversity website to learn how we ensure a fair and open environment that fosters growth and excellence.

Curious? So Are We.

We look forward to receiving your online application using the form below. Please include the following documents:

• An updated curriculum vitae detailing your publications, education, and relevant software design experience.
• Names and contact information for 2-3 professional references.

Please note that only applications matching the job profile will be considered.

About ETH Zürich

ETH Zurich is one of the world’s leading universities specializing in science and technology. We are renowned for our excellent education, cutting-edge fundamental research, and direct transfer of new knowledge into society. With over 30,000 individuals from more than 120 countries, our university promotes independent thinking and fosters an environment that inspires excellence. Located in the heart of Europe, yet forging connections globally, we collaborate to develop solutions for the challenges of today and tomorrow.